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Publications

* The following list contains publications prepared strictly within the framework of the TUMOR project, as well as articles tightly related to it.

Conference Papers:

  • G. Manikis, D. Emmanouilidou, V. Sakkalis, N. Graf, K. Marias
    "A Fully Automated Image Analysis Framework for Quantitative Assessment of Temporal Tumor Changes."
    International Conference on e-Health and Bioengineering (EHB 2011), Iaşi, Romania, November 24-26, 2011

  • D. Johnson, J. Cooper, S. McKeever
    "TumorML: Concept and Requirements of an In Silico Cancer Modelling Markup Language."
    33rd Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC '11), September 2011

  • D. Johnson, S. McKeever
    "The Case for Using Markup for Biomechanical Modelling."
    XXIII World Congress of the International Society of Biomechanics (ISB2011), Brussels, Belgium, July 3-7, 2011

  • I. Lykourentzou, D. Dionysiou, G. Stamatakos
    "A collaborative system for the in silico oncology domain: Requirements, solutions and guidelines."
    4th International Advanced Research Workshop on In Silico Oncology and Cancer Investigation (4th IARWISOCI) - The ContraCancrum Workshop, Athens, Greece, September 8-9, 2010
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  • Z. Wang, T. Deisboeck
    "Application of ANOVA-Based Global Sensitivity Analysis to a Multiscale Cancer Model."
    4th International Advanced Research Workshop on In Silico Oncology and Cancer Investigation (4th IARWISOCI) - The ContraCancrum Workshop, Athens, Greece, September 8-9, 2010
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  • D. Johnson, J. Cooper, S. McKeever
    "Markup Languages for In Silico Oncology."
    4th International Advanced Research Workshop on In Silico Oncology and Cancer Investigation (4th IARWISOCI) - The ContraCancrum Workshop, Athens, Greece, September 8-9, 2010
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  • J. Zepp, N. Graf, E. Skounakis, R. Bohle, E. Meese, H. Stenzhorn, Y.-J. Kim, C. Farmaki, V. Sakkalis, W. Reith, G. Stamatakos, K. Marias
    "Tumor segmentation: The impact of standardized signal intensity histograms in glioblastoma."
    4th International Advanced Research Workshop on In Silico Oncology and Cancer Investigation (4th IARWISOCI) - The ContraCancrum Workshop, Athens, Greece, September 8-9, 2010
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  • S. Giatili, N. Uzunoglu , G. Stamatakos
    "An explicit boundary condition treatment of a diffusion based glioblastoma tumor growth model."
    4th International Advanced Research Workshop on In Silico Oncology and Cancer Investigation (4th IARWISOCI) - The ContraCancrum Workshop, Athens, Greece, September 8-9, 2010
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  • G. Stamatakos
    "In silico oncology:a hypermatrix- operator formulation of a top-down multiscale simulation model of tumor response to treatment: the oncosimulator concept."
    4th International Advanced Research Workshop on In Silico Oncology and Cancer Investigation (4th IARWISOCI) - The ContraCancrum Workshop, Athens, Greece, September 8-9, 2010
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  • D. Dionysiou
    "The ISOG, NTUA tumor response to treatment discrete simulation models: a review of basic concepts and algorithms."
    4th International Advanced Research Workshop on In Silico Oncology and Cancer Investigation (4th IARWISOCI) - The ContraCancrum Workshop, Athens, Greece, September 8-9, 2010
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  • G. Stamatakos, D. Dionysiou, S. Giatili, E. Kolokotroni, Ε. Georgiadi, A. Roniotis, V. Sakkalis, P. Coveney, S. Wan, S. Manos, S. Zasada, A. Folarin, P. Buechler, T. Bardyn, S. Bauer, M. Reyes, T. Bily, V. Bednar, M. Karasek, N. Graf, R.M. Bohle, E. Meese, Y.-J. Kim, H. Stenzhorn, G. Clapworthy, E. Liu, J. Sabczynski, K. Marias
    "CONTRA CANCRUM AT THE PROJECT LEVEL: The ContraCancrum Oncosimulator: Integrating biomechanisms across scales in the clinical context."
    4th International Advanced Research Workshop on In Silico Oncology and Cancer Investigation (4th IARWISOCI) - The ContraCancrum Workshop, Athens, Greece, September 8-9, 2010
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Journal Papers and Books:

  • Roniotis A, Manikis G, Sakkalis V, Zervakis M, Karatzanis I, Marias K
    "High grade glioma diffusive modeling using statistical tissue information and diffusion tensors extracted from atlases."
    IEEE Transactions on Information Technology in Biomedicine, [Epub ahead of print], 2011
    DOI: 10.1109/TITB.2011.2171190
    PMID: 21990337

  • Bauer S, May C, Dionysiou D, Stamatakos G, Buchler P, Reyes M
    "Multi-Scale Modeling for Image Analysis of Brain Tumor Studies."
    IEEE Transactions on Biomedical Engineering [Epub ahead of print], 2011
    DOI: 10.1109/TBME.2011.2163406
    PMID: 21813362

  • May CP, Kolokotroni E, Stamatakos GS, Büchler P
    "Coupling biomechanics to a cellular level model: An approach to patient-specific image driven multi-scale and multi-physics tumor simulation."
    Progress in Biophysics and Molecular Biology, Volume 107, Number 1, 193-199, 2011
    DOI: 10.1016/j.pbiomolbio.2011.06.007
    PMID: 21740923

  • Alloussi SH, Alkassar M, Urbschat S, Graf N, Gärtner B
    "All reovirus subtypes show oncolytic potential in primary cells of human high-grade glioma."
    Oncology Reports, Volume 26, Number 3, 645-649, 2011
    DOI: 10.3892/or.2011.1331
    PMID: 21637921

  • Alkassar M, Gärtner B, Roemer K, Graesser F, Rommelaere J, Kaestner L, Haeckel I, Graf N
    "The combined effects of oncolytic reovirus plus Newcastle disease virus and reovirus plus parvovirus on U87 and U373 cells in vitro and in vivo."
    Journal of Neuro-Oncology, Volume 104, Number 3, 715-727, 2011
    DOI: 10.1007/s11060-011-0606-5
    PMID: 21607667

  • Stamatakos GS, Georgiadi EC, Graf N, Kolokotroni EA, Dionysiou DD
    "Exploiting clinical trial data drastically narrows the window of possible solutions to the problem of clinical adaptation of a multiscale cancer model."
    PLoS ONE 6(3): e17594, 2011
    DOI: 10.1371/journal.pone.0017594
    PMID: 21407827

  • Skounakis E, Farmaki C, Sakkalis V, Roniotis A, Banitsas K, Graf N, Marias K
    "DoctorEye: A Clinically Driven Multifunctional Platform, for Accurate Processing of Tumors in Medical Images."
    The Open Medical Informatics Journal, Volume 4, 105-115, 2010
    DOI: 10.2174/1874431101004010105
    PMID: 21603180

  • Farmaki C, Marias K, Sakkalis V, Graf N
    "Spatially adaptive active contours: a semi-automatic tumor segmentation framework."
    International Journal of Computer Assisted Radiology and Surgery, Volume 5, Number 4, 369-384, 2010
    DOI: 10.1007/s11548-010-0477-9
    PMID: 20473782

  • Giatili S,Stamatakos G
    "Tumor Studies."
    Submitted to Applied Mathematics and Computation, April 2011

October 22 - 23, 20125th International Advanced Research Workshop on In Silico Oncology and Cancer Investigation - The TUMOR Project Workshop (Athens, GR).

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